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Molecular Evolution A Statistical Opproach

Stručný popis

V této publikace autor uvádí a vysvětluje statistické metody a algoritmy vyvinuté pro bádání tajů molekulární evoluce, fylogeneze a fylogeografie pro srovnávací analýzy genetických dat. Publikace poskytuje vysvětlení složitých statistických modelů a zásad používaných v reálných analýzách dat. Odkazy na webové stránky obsahují ukázkové datové sady C a R programů, které implementují výpočetní algoritmy popsané v knize.

Autor: Ziheng Yang

Cena s DPH:  1588 Kč
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Základní informace
NakladatelOxford University Press
ISBN9780199602612
Vydání2014
Vazbabrožovaná
Počet stran492
Popis

Presents and explains the statistical methods and computational algorithms developed in molecular evolution, phylogenetics and phylogeography for the comparative analysis of genetic sequence data
• Clear explanations of complex statistical models and principles, using examples of real data analysis and numerical calculations to illustrate the theory
• Web-based support material includes example data sets, C and R programs that implement computational algorithms discussed in the book, and a primer on probably and statistics
• Ideal graduate seminar course material with working problems at the end of each chapter
Studies of evolution at the molecular level have experienced phenomenal growth in the last few decades, due to rapid accumulation of genetic sequence data, improved computer hardware and software, and the development of sophisticated analytical methods. The flood of genomic data has generated an acute need for powerful statistical methods and efficient computational algorithms to enable their effective analysis and interpretation.

„ I think Molecular Evolution: A Statistical Approach would also work very well as a text for a graduate level course in statistical phylogenetics ... The exercises at the end of each chapterwould be useful for academics anting to use the book as a course textquestions cover an interesting range of problems that would get the class both thinking and programming." - Barbara R. Holland, Systematic Biology
Ziheng Yang, RA Fisher Professor of Statistical Genetics, Department of Genetics, Evolution and Environment, University College London
Ziheng Yang is currently RA Fisher Professor of Statistical Genetics in University College London. He obtained a Ph. D in agronomy in Beijing Agricultural University in 1992. Since then he held a few postdoctoral researcher positions in the UK and US. He joined UCL in 1997, first as a lecturer, then reader and professor. He teaches statistical genetics. He has published about 150 research papers and book chapters in molecular evolution, phylogenetics, population genetics, and computational biology. His program package paml is widely used in the molecular evolution community. He was elected a Fellow of the Royal Society in 2006.

Obsah
1: Models of nucleotide substitution1
2: Models of amino acid and codon substitution35
3: Phylogeny reconstruction: overview70
4: Maximum likelihood methods102
5: Comparison of phylogenetic methods and tests on trees153
6: Bayesian theory182
7: Bayesian computation (MCMC)214
8: Bayesian phylogenetics263
9: Coalescent theory and species trees308
10: Molecular clock and estimation of species divergence times361
11: Neutral and adaptive protein evolution390
12: Simulating molecular evolution418
Appendixes442
References450